PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G100600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 359aa    MW: 39498.1 Da    PI: 9.9453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G100600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.27.5e-082282661755
                           HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                           A+rsR RK+++i+eLe +v++L++e  +   e+e l+++
  Sobic.005G100600.2.p 228 AQRSRVRKLQYIAELEGRVQALQSEGVEVSAEMEFLTQQ 266
                           89***********************99988888887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.1E-7217276IPR004827Basic-leucine zipper domain
CDDcd147031.09E-14218268No hitNo description
SuperFamilySSF579591.94E-6227270No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-5228270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMMANPKLHK QALLPPRSPF PTAAAPSPYA DRGPIARPQV GAAHHRHGHH QRTSSESFIE  60
EQPPLWLDDL LNEPETPAAR QSGGRAGHRR SSSDSFALFD GGAAGAAGAY ANGFEGMGRG  120
GGQPAPWGGV QEYYAKPASF GRAHGRPWEQ GMPNSAGFRH GGGLPMPMKD KVGGHHGPPN  180
VPREHDHGMD KRTPDDAGHD QKVGAKEGVL PKHAQSEADN KRAKQQYAQR SRVRKLQYIA  240
ELEGRVQALQ SEGVEVSAEM EFLTQQNIML DLENKALKQR LESLAQEQLI KRFQQEMFER  300
EIGRLRSLYQ QQQQQQQQQV PALVRSNSRD LDVQFANLSL KHKDPNSGRD ALSGPLRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.71061e-150embryo| panicle| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G100600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283530.0KJ728353.1 Zea mays clone pUT6635 bZIP transcription factor (bZIP119) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317003.10.0uncharacterized protein At4g06598-like
RefseqXP_021317004.10.0uncharacterized protein At4g06598-like
TrEMBLA0A1B6PRF30.0A0A1B6PRF3_SORBI; Uncharacterized protein
STRINGSb05g008650.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.22e-56bZIP family protein