PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G087600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 210aa    MW: 22582.4 Da    PI: 4.7443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G087600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-181867255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  Sobic.005G087600.2.p 18 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 67
                          69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-311875IPR001471AP2/ERF domain
SMARTSM003801.6E-361881IPR001471AP2/ERF domain
PROSITE profilePS5103223.4721875IPR001471AP2/ERF domain
CDDcd000186.99E-301875No hitNo description
SuperFamilySSF541718.5E-221875IPR016177DNA-binding domain
PfamPF008478.8E-121967IPR001471AP2/ERF domain
PRINTSPR003673.1E-121930IPR001471AP2/ERF domain
PRINTSPR003673.1E-125777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEVVVLDNDV AGVAAGGQYR GVRKRKWGKW VSEIREPGKK TRIWLGSFES PEMAAVAHDV  60
AALRLRGREA RLNFPGLVHR FRRPATAEPD DVRAAALEAA AQVRFRPDLV VMHHRHQAAG  120
DGEVVGCCYG GGGSGSGSDA GSPEPLVGDD VAWDALLGTD ELAAEAESPK MWAELAEAML  180
MAPPVWEGSM ADNDEWAQGN LWDLPVWNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171479167ATERF1
3gcc_A1e-171479167ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G087600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449280.21e-150ethylene-responsive transcription factor ERF027
TrEMBLA0A1Z5RHE21e-148A0A1Z5RHE2_SORBI; Uncharacterized protein
STRINGSb05g007135.11e-136(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-27ERF family protein