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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.005G064600.2.p |
Common Name | Sb05g005450, SORBIDRAFT_05g005450 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
NAC |
Protein Properties |
Length: 385aa MW: 41402.1 Da PI: 4.8579 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G064600.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 161.7 | 2.8e-50 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrFhPtd+elv++yL +k+ g +l + vi+evd+yk++Pw+Lp+k++++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg d
Sobic.005G064600.2.p 9 LPPGFRFHPTDDELVMYYLLRKCGGLPLAA-PVIAEVDLYKFDPWQLPEKAYGGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGAD 96
79*************************999.89***************999999*********************************** PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
k+v s + v +kk Lvfy g+ pkg+kt+W+mheyrl
Sobic.005G064600.2.p 97 KPVGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 133
***99..779***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MDCGGALQLP PGFRFHPTDD ELVMYYLLRK CGGLPLAAPV IAEVDLYKFD PWQLPEKAYG 60 GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPVG SPRPVAIKKA LVFYAGKPPK 120 GVKTNWIMHE YRLADVDRSA AARKKTNNAL RLDDWVLCRI YNKKGVIERY DTVDDDADDA 180 VAEDVKPAPA SRNNPRGTAS GRGGAAAAAA PMKVEFPEYG GYYDYEDLEA TPSAGMLCFD 240 RPSAAVPTAP ASAPAPAPGP ALSSPPPAAD SDPERDDDSN NSVAWTMHHT HAHTDNYSSC 300 GSEHVLSPSP DLPDRDHAES QSAGLWWPVG VGGDWAAAED GFMVDVDVDD GSSLFGPPSP 360 GLPFARVDAA AFGDMLASYL HKPF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and embryo. Weakly expressed in callus. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT069960 | 0.0 | BT069960.1 Zea mays full-length cDNA clone ZM_BFb0347F20 mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Sperotto RA, et al.
Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. J. Plant Physiol., 2010. 167(17): p. 1500-6 [PMID:20580124] - Takasaki H, et al.
The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] - Kan CC,Chung TY,Juo YA,Hsieh MH
Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots. BMC Genomics, 2015. 16(1): p. 731 [PMID:26407850]
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