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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.005G060000.1.p |
Common Name | Sb05g004880, SORBIDRAFT_05g004880 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
NAC |
Protein Properties |
Length: 233aa MW: 24907.7 Da PI: 6.5142 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G060000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 63.5 | 6.5e-20 | 14 | 163 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra............ 77
pp ++F+Ptd ++vv+yL +++ g +++ e+++ + d +++ Pw+L ++ +a++++ +fF + + + kr+ r+
Sobic.005G060000.1.p 14 PPAYKFDPTDTDIVVHYLLPRALGVPNPYEHAVIDGDPCSCPPWELMrRNGHADSDHAFFFPPPRDGE---KRPVRVvsspapapgedd 99
899*************************99999999**********8333334444667777766544...577775577889999888 PP
NAM 78 ..tksgyWkatgkdke.vlsk.........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
++g W a+ ++++ v+ + + + L +y+g++p+ + Wvmhey++
Sobic.005G060000.1.p 100 gaRARGKWDAQKSTESsVVLVrgggpggigG--GaevlvKYKRCNLSYYHGKEPS--TSGWVMHEYQI 163
87668****9887554144435666666652..045553445568****999999..89*******86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MEAWRFGFDP SLFPPAYKFD PTDTDIVVHY LLPRALGVPN PYEHAVIDGD PCSCPPWELM 60 RRNGHADSDH AFFFPPPRDG EKRPVRVVSS PAPAPGEDDG ARARGKWDAQ KSTESSVVLV 120 RGGGPGGIGG GAEVLVKYKR CNLSYYHGKE PSTSGWVMHE YQITVPPRLS GTVLSRVKVT 180 DRGKQRLRKA AAGGGSQQVV AVPDPDEPGP SNYDDGGGGD GNALGSSGGE RAE
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