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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.005G051200.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 330aa MW: 33946.7 Da PI: 8.6951 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G051200.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 184 | 233 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a++aa+++++g
Sobic.005G051200.2.p 184 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDAAALRFRG 233
7********.**********7.....337************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MELLLLVVVV NVQTRRRGGK HTHRVANAEG GGRGVPPPSR LSAAAGGGDE DDEDGRQEAA 60 AVAAAWRMMS GYERSREASI MVDALTAVVA GGAAAVAPPA ASGRRPVQQV VVLSPAEGQW 120 CSDYYAADVT PPPSARPALT TVHGAEHHGA SGIPATAPAV ASPGSTEQVP SLSSTDSGGT 180 PRRRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTAEAA ARAYDAAALR FRGSRAKLNF 240 PESATLVSQA LPPRVPPPPP PAPPERPEAL LDFGGGGEGS GAGAASCQSW QQGSSGSPSD 300 GGSGYPSPPP ATWADSGWWP PPPPRDPSR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU954664 | 8e-84 | EU954664.1 Zea mays clone 1475648 DNA binding protein mRNA, complete cds. |