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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.005G038700.2.p |
Common Name | Sb05g003240, SORBIDRAFT_05g003240 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 488aa MW: 53287.6 Da PI: 6.6956 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G038700.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 35.1 | 2.9e-11 | 183 | 211 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33
k+ rr+++NReAAr+sR+RKka+i++Le
Sobic.005G038700.2.p 183 KVIRRLAQNREAARKSRLRKKAYIQQLES 211
789************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 488 aa
Download sequence Send
to blast |
MGETSSSSHS RQDPSLLGYG FHGAIANSTT TPANFFDQEG ATYFGELEEA FMHQVASLRR 60 TQQQAATVSA PHHGDTKPFP TAATTTATAA TATTAARPPP TLDIFPAWPM RSLHTPKCSN 120 VTADSTDDSE SSSKNNSNHS SDQLGAAANM ATQFDQASQQ QQLQHKNMAT SSTPRTGKPL 180 DPKVIRRLAQ NREAARKSRL RKKAYIQQLE SCKLKLSQME QDMQRARSQG LFLGGGTGAN 240 TSSGAAMFDV EYARWLDDHS RRLAELNGAL HAHLADGDLR AIVDDALTHH DELFQLKAMA 300 AKSDVFHLIT GVWTTPAERC FLWMGGFRPS DLLKTLLPQL DPLTEQQVIG ICNLQQSSQQ 360 AEEALSQGLE QLHQSLADTM AGGSLIDDAN MSFMSQMALA LGKLANLEGF VIQADNLRQQ 420 TLHQMHRILT VRQAARCFLA IGEYHNRLRA LSSLWASRPR EILVNDEGNC EEISIAAQPS 480 QSQFSAF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF111321 | 0.0 | KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] - Miyamoto K, et al.
Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]
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