PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G038700.2.p
Common NameSb05g003240, SORBIDRAFT_05g003240
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 488aa    MW: 53287.6 Da    PI: 6.6956
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G038700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-11183211533
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                           k+ rr+++NReAAr+sR+RKka+i++Le 
  Sobic.005G038700.2.p 183 KVIRRLAQNREAARKSRLRKKAYIQQLES 211
                           789************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-7179242IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.668181225IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-8181225No hitNo description
CDDcd147086.37E-21183235No hitNo description
PfamPF001703.1E-8183218IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.99E-7185224No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF141448.0E-29263336IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGETSSSSHS RQDPSLLGYG FHGAIANSTT TPANFFDQEG ATYFGELEEA FMHQVASLRR  60
TQQQAATVSA PHHGDTKPFP TAATTTATAA TATTAARPPP TLDIFPAWPM RSLHTPKCSN  120
VTADSTDDSE SSSKNNSNHS SDQLGAAANM ATQFDQASQQ QQLQHKNMAT SSTPRTGKPL  180
DPKVIRRLAQ NREAARKSRL RKKAYIQQLE SCKLKLSQME QDMQRARSQG LFLGGGTGAN  240
TSSGAAMFDV EYARWLDDHS RRLAELNGAL HAHLADGDLR AIVDDALTHH DELFQLKAMA  300
AKSDVFHLIT GVWTTPAERC FLWMGGFRPS DLLKTLLPQL DPLTEQQVIG ICNLQQSSQQ  360
AEEALSQGLE QLHQSLADTM AGGSLIDDAN MSFMSQMALA LGKLANLEGF VIQADNLRQQ  420
TLHQMHRILT VRQAARCFLA IGEYHNRLRA LSSLWASRPR EILVNDEGNC EEISIAAQPS  480
QSQFSAF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.71640.0callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G038700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1113210.0KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317278.10.0transcription factor TGAL4 isoform X2
SwissprotQ53Q700.0TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBLA0A1Z5RGK10.0A0A1Z5RGK1_SORBI; Uncharacterized protein
STRINGSb05g003240.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-123bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  3. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]