PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G029600.1.p
Common NameSb05g002490, SORBIDRAFT_05g002490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 488aa    MW: 52104.8 Da    PI: 6.1631
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G029600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.91e-90204751374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgd..pmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfs 85 
                           lv+ L ecA +v++g  e+a ++Lar     a+ +gd  p++Rla  ++ ALa+rl+r +v+ +++al   +++  +   + aa++ f+
  Sobic.005G029600.1.p  20 LVQDLCECAGHVEAGAIERAGRCLARATGDlAAAAGDdgPLRRLAVPMADALARRLVRlMVPAVADALIDPSDH-LDPRCVRAARRRFF 107
                           6899*********************97654477777445*******************9999999998444443.345566678899** PP

                  GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                           e+sP+++ +  ++N+aIlea+e+e+ vH+iDf     q+ QW+ Ll+++  Rp+gpp+lR+T v++    + + l ++ erLak  eel
  Sobic.005G029600.1.p 108 ELSPFFRAAAAVTNRAILEAMENEKNVHVIDFAgpTAQPCQWIQLLREFHRRPGGPPHLRLTIVHD----DGDLLANISERLAKENEEL 192
                           ********************************75579*****************************....******************* PP

                  GRAS 173 gvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll........................................... 214
                           +vp++ +  v++++e+l++ +L     +k+gEa aV + lqlhrll                                           
  Sobic.005G029600.1.p 193 DVPLQVHR-VVSQIEALDPTDLhgvlGLKSGEARAVVCTLQLHRLLaaaddpagtfsaghrfnqtasvarlqqmastscppsvgacrag 280
                           ********.7999*******9966667889*********************************************************** PP

                  GRAS 215 ............................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                                                         +++++ +  ++L++   lsP+vvvv+eqea+h++ sF +rf eal yy+a++dsl+a +
  Sobic.005G029600.1.p 281 gggggydddddidsspatpmgfvspplsTPQLQMPPALASFLSAAGALSPEVVVVTEQEASHGGVSFRKRFGEALGYYAAVYDSLDAAA 369
                           **************************98667777778888*********************************************8774 PP

                  GRAS 276 pres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgs 357
                            +      er+ vEr++lg+ei++v+   ga+rrerh +l++W +r+e  GF++vpls+ a+ q + +l++++  g        e+ g+
  Sobic.005G029600.1.p 370 EAYRrpaAERAEVERAVLGEEIRDVLLRDGAHRRERHDRLQRWAARMELGGFRSVPLSYAAVRQGNDVLHRCGLIGCGAApasrEHGGC 458
                           43333449*****************************************************************77755544455889** PP

                  GRAS 358 lvlgWkdrpLvsvSaWr 374
                           l+l+W++ pL+svSaWr
  Sobic.005G029600.1.p 459 LLLCWSSSPLYSVSAWR 475
                           ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.4461451IPR005202Transcription factor GRAS
PfamPF035143.6E-8820475IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MHPAMPTQSD DDDVSSSMHL VQDLCECAGH VEAGAIERAG RCLARATGDL AAAAGDDGPL  60
RRLAVPMADA LARRLVRLMV PAVADALIDP SDHLDPRCVR AARRRFFELS PFFRAAAAVT  120
NRAILEAMEN EKNVHVIDFA GPTAQPCQWI QLLREFHRRP GGPPHLRLTI VHDDGDLLAN  180
ISERLAKENE ELDVPLQVHR VVSQIEALDP TDLHGVLGLK SGEARAVVCT LQLHRLLAAA  240
DDPAGTFSAG HRFNQTASVA RLQQMASTSC PPSVGACRAG GGGGGYDDDD DIDSSPATPM  300
GFVSPPLSTP QLQMPPALAS FLSAAGALSP EVVVVTEQEA SHGGVSFRKR FGEALGYYAA  360
VYDSLDAAAE AYRRPAAERA EVERAVLGEE IRDVLLRDGA HRRERHDRLQ RWAARMELGG  420
FRSVPLSYAA VRQGNDVLHR CGLIGCGAAP ASREHGGCLL LCWSSSPLYS VSAWRPDARS  480
GAPGSCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-16322475226375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G029600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450245.20.0scarecrow-like protein 3
TrEMBLC5Y4700.0C5Y470_SORBI; Uncharacterized protein
STRINGSb05g002490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP1542634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-70scarecrow-like 3