PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G028500.1.p
Common NameSb05g002390, SORBIDRAFT_05g002390
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 399aa    MW: 43623.9 Da    PI: 4.3431
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G028500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.11.8e-19141421126
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat..gkrknr.at 78 
                           +ppG+rF+Pt  el+++yL++ v++++      e+  +++ +d+y  +P++L +   ++++++ +wyf s ++ k  +  +kr nr + 
  Sobic.005G028500.1.p  14 VPPGYRFKPTPRELIQCYLEPWVATEPghqspGEFYGIMAAADVYGEDPRTLASrfqHIAHDDGNWYFLSVARWKDGNasSKRMNRaVG 102
                           69***********************99766544444579999**********842445555777******999888753378999*445 PP

                   NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                           + g+W+ +gk  +v       vg ++++ f       g k++W+m+e+
  Sobic.005G028500.1.p 103 ALGTWHGSGKRIPVRG-----VGYRQSFEFR---PAGGGKATWLMEEF 142
                           58********988877.....9********6...788889*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-219163IPR003441NAC domain
PROSITE profilePS5100524.42214164IPR003441NAC domain
PfamPF023656.0E-1515142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MVEHAPPRWP NVNVPPGYRF KPTPRELIQC YLEPWVATEP GHQSPGEFYG IMAAADVYGE  60
DPRTLASRFQ HIAHDDGNWY FLSVARWKDG NASSKRMNRA VGALGTWHGS GKRIPVRGVG  120
YRQSFEFRPA GGGKATWLME EFGTVWNDAT AEDGIRVLCR LHLRPKATVA VAAAAADGDE  180
LQQQLEANDV PAPCNKRQRE RVPPRQQEEH HFDADYWTAA PDVRGFSSSY ATTTAAPAPA  240
PPDVGCSYAT TSSQTAAAVP VTELTAEALA AAWQHQPMME QQAGDGGYQY QCAGGVHGGV  300
YIRADDDEPQ PLEVVVEDVE FTAQELKLED SDYVFTAEHL LQLDVDDGWI MDGNSNAFSF  360
LQTMCDGVQE NSDPKPEPSD GVQENNNDDD PKGDTDAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G028500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450239.10.0NAC domain-containing protein 2
TrEMBLA0A1Z5RGL60.0A0A1Z5RGL6_SORBI; Uncharacterized protein
STRINGSb05g002390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Representative plantOGRP1706023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.12e-13NAC domain containing protein 50