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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.005G020200.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
MYB |
Protein Properties |
Length: 384aa MW: 40616.6 Da PI: 7.4358 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G020200.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.8 | 9.4e-17 | 38 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl
Sobic.005G020200.2.p 38 KGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 85
79********************************************97 PP
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2 | Myb_DNA-binding | 47.1 | 5.5e-15 | 91 | 136 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+ E+ ++v++ +lG++ W++Ia++++ Rt++++k++w+++l
Sobic.005G020200.2.p 91 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 136
89********************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MGADLLATIN IATGRGREGA AGAAMGRPPC CDKEGIKKGP WTPEEDIILV SYIQEHGPGN 60 WRSVPINTGL MRCSKSCRLR WTNYLRPGIR RGNFTPHEEG IIVHLQSLLG NRWAAIASYL 120 PQRTDNDIKN YWNTHLKKKL KKHQAIGAIF APPPPPASDS SSSSSIVVMP TTTVGGGGGG 180 CHVHHHHRDM LGGGTNLLVS RDSYYARPSG GAGCCSNPAE VAQLIARRSP FAADGGGDSS 240 SSSYASSMDN ISKLLTGFMK QQQSSPSPDA AAAADIKPSS AAHVNNHHAL LSSSSSFHHM 300 SAAGTGSGTP PAAACFNDMT MPSPPHVQQQ AALMGHHGGY DDDPRQASPL SPIEKWLFEE 360 AAEQVGDLMD LSEDCCSSVP MMF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728308 | 1e-154 | KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds. |