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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G014800.1.p | ||||||||
Common Name | Sb05g001280, SORBIDRAFT_05g001280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26062.9 Da PI: 6.518 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.2e-19 | 85 | 134 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+++AeIrdp g kr +lg+f+taeeAa+ ++aa+++++g Sobic.005G014800.1.p 85 FRGVRRRP-WGKYAAEIRDP---GlAGKRRWLGTFDTAEEAAAVYDAAALRIRG 134 8*******.**********9...6556*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-34 | 84 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.617 | 84 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-16 | 85 | 141 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-29 | 85 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 85 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 85 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 85 | 143 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-9 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDPLHPRDLA MDDTRQHQHL RPRHAAGGRM VRVRFADSEA TDSDSSDECH RQRHRLLHQI 60 GQPLPSSPAP APQRNRLSRT GDRPFRGVRR RPWGKYAAEI RDPGLAGKRR WLGTFDTAEE 120 AAAVYDAAAL RIRGRRAVTN FPSSPAAVAP APAPALAAPR SNPSPAPEAE TSSASTVVDA 180 GTGGDDEVTG VPPTPPWFGE GGPLELLDFG LPPAATKRGQ WEEEEFGDLG DLDHLFDLPF 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 85 | 142 | 6 | 63 | ATERF1 |
3gcc_A | 7e-21 | 85 | 142 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G014800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450156.1 | 1e-171 | ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A1Z5RHA0 | 1e-170 | A0A1Z5RHA0_SORBI; Uncharacterized protein | ||||
STRING | Sb05g001280.1 | 1e-170 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP19763 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 3e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G014800.1.p |
Entrez Gene | 8083013 |