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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.005G013600.5.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 228aa MW: 25245.9 Da PI: 8.7513 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G013600.5.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 70 | 3.4e-22 | 44 | 105 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++
Sobic.005G013600.5.p 44 DDGHQWRKYGEKKLSNSHFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCS 105
8***************************99999*******876157**************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MALDSVPPYP CDLGSSRAAA AARTQQRIRK DERTWTSDTY APYDDGHQWR KYGEKKLSNS 60 HFPRFYYRCT YKNDMKCPAT KQVQQKDTSD PPLFSVTYFN HHTCSTSSSA IGSARDITSQ 120 SSSKKAVSIC FSPHTASEQP SFLTSPAMPQ STIMHPYSAN QQSDRSAYAY QQLQWTGSVP 180 SHASNGPAKM EVDDSAQPSP SSSSTSALSR TLLPIGQSRC IEYFHFL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034784 | 1e-155 | BT034784.1 Zea mays full-length cDNA clone ZM_BFb0017P16 mRNA, complete cds. |
GenBank | EU953900 | 1e-155 | EU953900.1 Zea mays clone 1448775 WRKY46 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |