PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G013500.1.p
Common NameSb05g001170, SORBIDRAFT_05g001170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 362aa    MW: 38959.9 Da    PI: 6.7669
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G013500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.84e-22132194259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 
                           dDgy+WrKYG K+++g+ f+rsY+rCt++   gC ++k+v++ ++  d  ++++tY+++H+++
  Sobic.005G013500.1.p 132 DDGYEWRKYGEKKINGTLFTRSYFRCTYKddaGCLATKHVQQRDDnsDLPMFHVTYNNDHTCN 194
                           8***************************99999********9875115679**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-23117195IPR003657WRKY domain
SuperFamilySSF1182905.62E-21125195IPR003657WRKY domain
SMARTSM007742.0E-31131195IPR003657WRKY domain
PROSITE profilePS5081117.109132196IPR003657WRKY domain
PfamPF031061.3E-23132193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MACVGEREAA VREVAQVYEL IKLQQPLLLL HSPQHPPPPS TAKLAQSLLA KALRALNVAL  60
SVMKQQQPVV VVKAEPHQLS PPSPASANSQ VAIVPSTATR GAKRRRSSVA IMEGKKKTSS  120
SSWATVTAVP YDDGYEWRKY GEKKINGTLF TRSYFRCTYK DDAGCLATKH VQQRDDNSDL  180
PMFHVTYNND HTCNRAKAAG IANNGSSSNN LAALLAGCCS NGSGSGSGKG LTTMTTTNAR  240
PTEHAAAAAA MNMMKQEPPL LLPALIDLQQ PSACFPNEQI PQCQKEPLFP TSMEQQFVCG  300
ALRDHDSPVD GDIPSATGSC NSGETSWWDG YSGDMAAQMA AEDDPLHDLD RFLQCDSFMD  360
Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G013500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450147.10.0probable WRKY transcription factor 47
TrEMBLC5Y3H40.0C5Y3H4_SORBI; Uncharacterized protein
STRINGSb05g001170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Representative plantOGRP1362235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.13e-16WRKY DNA-binding protein 54