PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G013400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 335aa    MW: 36498.3 Da    PI: 5.9871
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G013400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.17.7e-23135197259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                           dDgy+WrKYG K+++g+ f+rsY+rCt++   gC ++k+v++ +  +dp ++++tY+++H+++
  Sobic.005G013400.1.p 135 DDGYEWRKYGEKKINGTLFTRSYFRCTYKddaGCLATKHVQQMDnnSDPPMFHVTYNNDHTCN 197
                           8***************************99999********965226999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-24120198IPR003657WRKY domain
SuperFamilySSF1182906.67E-22128198IPR003657WRKY domain
SMARTSM007741.0E-32134198IPR003657WRKY domain
PROSITE profilePS5081118.062135199IPR003657WRKY domain
PfamPF031061.8E-24135196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MACVADREDA VREVTQVYEL IKLQQPLLLL HSPQHPPPPP STTCQLAQSL LAKALRALNV  60
ALSVMKQQPA PVTPISVIKA EPHQLSPPCS LASAESQAAI VLSTATRGAK RRRSTEGKKK  120
NTSSSWATVT AVPYDDGYEW RKYGEKKING TLFTRSYFRC TYKDDAGCLA TKHVQQMDNN  180
SDPPMFHVTY NNDHTCNTSA RANTGSSSNL AALLAGCCNM KQEPTGHAAA AAAATMDMKQ  240
EVQEPPLLLP ALVDLQPSAC FHHEQIPRCQ EPLFPVSMEQ QFVCGPFRDD DSEIPSATGS  300
CISGETSWDG YSGHMAAAED DPLLDLERFL FMDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-13135196968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G013400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316320.10.0probable WRKY transcription factor 53
TrEMBLA0A1Z5RH150.0A0A1Z5RH15_SORBI; Uncharacterized protein
STRINGSb05g001170.11e-155(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Representative plantOGRP1362235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-20WRKY DNA-binding protein 70