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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.005G004000.1.p |
| Common Name | Sb05g000480, SORBIDRAFT_05g000480 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
G2-like |
| Protein Properties |
Length: 364aa MW: 39782.6 Da PI: 6.9675 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.005G004000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 97.3 | 1.1e-30 | 84 | 137 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtpeLH +F++av++LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+
Sobic.005G004000.1.p 84 PRLRWTPELHLCFLRAVDRLGGQDRATPKLVLQLMDVKGLSIGHVKSHLQMYRS 137
9****************************************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MAGGSKGCDE SSADHQLLLS SGQAGDDGED DAGGADDVPP AGRHDGSSSN SSTVELDEAG 60
GDSGRKVAGA SPSSVRPYVR SKNPRLRWTP ELHLCFLRAV DRLGGQDRAT PKLVLQLMDV 120
KGLSIGHVKS HLQMYRSKKI DDSDQGATGS WRDLHHQLQD GGQAYNLGHL SFHHGQTGAS 180
TILSARFGAW PHWSNFHDPS YLLHSHHLLG SKHYYSSTAE ADVFLRNRAQ YTARATSNTP 240
ASTTLQRCLN DQFMNHHQRR LSQNEDNIHH DPLDLELALD IGPSQDKRIK RSSGCSWRRH 300
QEEENVGNQE VESATDDTRL SLSLFPSPPY VRTSSGGHHK VLGLNMEKGT AHPTRTSTLD 360
LTI*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT068440 | 1e-109 | BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds. |
