PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G359200.1.p

Common Name

Sb04g038600, SORBIDRAFT_04g038600

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 179aa MW: 19163.5 Da PI: 9.3088

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G359200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.4	8.5e-15	103	160	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ +r++kNRe+A rsR+RK+a+++eLe++v L +eN +Lk + ++lk +a+l ++ Sobic.004G359200.1.p 103 RKNIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRQCKQLKVDMAALIQQ 160 6889**************************************9999999999888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.3E-12	99	163	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-14	100	160	No hit	No description
PROSITE profile	PS50217	11.312	101	157	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-11	103	159	No hit	No description
CDD	cd14707	7.55E-16	103	151	No hit	No description
Pfam	PF00170	3.2E-12	103	160	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MPRSPQLSLS GCSSLFSLSS TSTSRDNDDS AAALTAPVPA PPAGASLHPL PPRRLPILSL 60 SVGGEEENED EEEYLLGAGA LDLQLTGAGG GSNSSGGGCD EERKNIRMMK NRESALRSRA 120 RKRAYVQELE KEVRRLVNEN LKLKRQCKQL KVDMAALIQQ SSSKSSSHIR RTSSSTQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G359200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956324	1e-158	EU956324.1 Zea mays clone 1560828 bZIP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453108.1	1e-125	bZIP transcription factor 27
TrEMBL	C5XWU0	1e-123	C5XWU0_SORBI; Uncharacterized protein
STRING	Sb04g038600.1	1e-124	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4017	30	72
Representative plant	OGRP9528	5	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	8e-13	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.004G359200.1.p
Entrez Gene	8057261