PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G336700.2.p | ||||||||
Common Name | Sb04g036450, SORBIDRAFT_04g036450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31573.8 Da PI: 6.8976 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.9 | 1.4e-16 | 50 | 96 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L A+eY+k+Lq Sobic.004G336700.2.p 50 VHNLSEKRRRSRINEKMKALQTLIPNS-----SKTDKASMLDDAIEYLKQLQ 96 6*************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-20 | 43 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-20 | 44 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.25E-16 | 49 | 100 | No hit | No description |
Pfam | PF00010 | 3.6E-14 | 50 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-18 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MDAQQQQLDL VMRHQSMATV YESEDALGSS ESDPARPARP RGKRSRAAEV HNLSEKRRRS 60 RINEKMKALQ TLIPNSSKTD KASMLDDAIE YLKQLQLQVQ MLSMRNGLYL PPGNLSGVPE 120 ALASSEMCAA LNQSGAKASN SGAVVLPGNQ IPVARLLFDL PNHDQRHENP LVLQSVPSSS 180 TAVEPQFLQE PAQPNLQSFQ LALPPEMLFK EDMMLEHRLT SAQETTSLPG HEAKPGRQEA 240 RMVNSDLFDR GSLGKERAQD LMPKNTESVL FMPYLHRVAT QREV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G336700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033382 | 0.0 | BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds. | |||
GenBank | BT064056 | 0.0 | BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds. | |||
GenBank | KJ726988 | 0.0 | KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315410.1 | 0.0 | transcription factor PIF5 isoform X2 | ||||
TrEMBL | A0A194YTY9 | 0.0 | A0A194YTY9_SORBI; Uncharacterized protein | ||||
STRING | Sb04g036450.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 3e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G336700.2.p |
Entrez Gene | 8056409 |