PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G331300.2.p
Common NameSb04g036020, SORBIDRAFT_04g036020
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 156aa    MW: 16947.1 Da    PI: 7.5114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G331300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-19756255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  Sobic.004G331300.2.p  7 RYRGVRQRH-WGSWVSEIRHP-----LlkARIWLGTFETAEDAARAYDEAARIMCG 56
                          69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.31E-30663No hitNo description
PfamPF008472.1E-11755IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-21765IPR016177DNA-binding domain
PROSITE profilePS5103221.127764IPR001471AP2/ERF domain
SMARTSM003802.9E-38770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-34765IPR001471AP2/ERF domain
PRINTSPR003673.5E-11819IPR001471AP2/ERF domain
PRINTSPR003673.5E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKA RIWLGTFETA EDAARAYDEA ARIMCGPRAR  60
TNFPADASDP PAAAASPSFL SAALVEKLHR FNLASVQATQ RQREAAAAAS AAAAAASAAT  120
PPPGAQWGGR FLEEQHVEQM IEELLDSNFS MEICC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17664463ATERF1
3gcc_A2e-17664463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G331300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681121e-147EU968112.1 Zea mays clone 314589 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454712.11e-109ethylene-responsive transcription factor ERF003
SwissprotQ94AW55e-52ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLC5XUH51e-108C5XUH5_SORBI; Uncharacterized protein
STRINGSb04g036020.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-31ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]