PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G312700.1.p

Common Name

Sb04g034490, SORBIDRAFT_04g034490

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GeBP

Protein Properties

Length: 335aa MW: 36938.6 Da PI: 4.4331

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G312700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	35.2	3.4e-11	153	240	3	96
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 fqr ws +De +L l + ++g+ p++d+ + + + ++++ + s s+l +K+r+L+ +++k vkk g sk hd+ f+ Sobic.004G312700.1.p 153 FQRTWSTDDEFRILEVLAAHRLEHGTLPQADV--LANALAGKLDnSGCSLSELQSKVRSLQTRYTKAVKK---GA--PPSKGHDHRLFD 234 9**********************9888776..6667777765167999****************...44..45799*** PP DUF573 91 lskkiW 96 l k +W Sobic.004G312700.1.p 235 LLKNVW 240 **** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.9E-16	153	240	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAPKRSAPPP PPPPPAASSE ETASVSGSEE EEDEEEIAYS PPPAAPKRIA PPPQKDQESE 60 GSDEDEDGEE EEHEEEEEEE EEEDEKANHV IPSSATKNPP PPPPTREESK TSDEEEEEEE 120 EEEEAADDEM PQTKPAANQE VGPKGAKRPS APFQRTWSTD DEFRILEVLA AHRLEHGTLP 180 QADVLANALA GKLDNSGCSL SELQSKVRSL QTRYTKAVKK GAPPSKGHDH RLFDLLKNVW 240 PSVTKPAAKA AANSGAGREP DEMCGLYPYL AEEVQALQKA HPGLFKREFG MIDDSKAHAL 300 DEKIKKQRHA QMRLHLRHHD LIKEVTKTLM YLAE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.8238	0.0	embryo\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G312700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039851	0.0	BT039851.1 Zea mays full-length cDNA clone ZM_BFc0047B15 mRNA, complete cds.
GenBank	BT042096	0.0	BT042096.1 Zea mays full-length cDNA clone ZM_BFb0131H21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454628.2	0.0	uncharacterized protein LOC8078946
TrEMBL	C5XTG9	0.0	C5XTG9_SORBI; Uncharacterized protein
STRING	Sb04g034490.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6729	27	37
Representative plant	OGRP11065	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	3e-08	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sobic.004G312700.1.p
Entrez Gene	8075211