PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G311200.2.p
Common NameSb04g034350, SORBIDRAFT_04g034350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GeBP
Protein Properties Length: 562aa    MW: 60438.6 Da    PI: 7.0344
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G311200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.75e-11116204397
                DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                           +q+lws+ De+ lL +   f+++tg  p   d   +++ +++s+s ++ +  + +K+ r+  Kf             s  ++h++ + +
  Sobic.004G311200.2.p 116 AQSLWSDADEVKLLAAAAAFRERTGRPPLRlDAGSLFDSIRDSVSPHFDEAMVYSKLMRFESKFSCGAPG-------SSITTHERRVHD 197
                           699***********************99999*********************************987777.......7889999***** PP

                DUF573  91 lskkiWg 97 
                           ls ++Wg
  Sobic.004G311200.2.p 198 LSTRVWG 204
                           ******8 PP
2DUF57332.62.2e-10369455597
                DUF573   5 rlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                           + ws+  e++lL +   f+++tg sp   d  a+++ +++s+s ++++ +++ K+ r++ Kf +   +       + +++hd+   +ls
  Sobic.004G311200.2.p 369 KRWSDAEEVTLLAAAAFFRERTGRSPLPiDAGALFDSIRDSVSPRINEANVSYKLTRFRSKFLHSAPE-------KSATAHDRLLHDLS 450
                           56*************************99**********************************99988.......77899999999999 PP

                DUF573  93 kkiWg 97 
                            k Wg
  Sobic.004G311200.2.p 451 AKSWG 455
                           99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.1E-11117204IPR007592Protein of unknown function DUF573
PfamPF045042.4E-9369455IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MPSEQPSAST VATDPAHTPL FSPRRRWKKP SSGPQPRVGG GNQRGPNPSP LGSPSSRSEL  60
KRTLRESAET AGLVLDLNAA KALRGSDASA RPDGDNGDLE RLGAVRVAVD VDHGAAQSLW  120
SDADEVKLLA AAAAFRERTG RPPLRLDAGS LFDSIRDSVS PHFDEAMVYS KLMRFESKFS  180
CGAPGSSITT HERRVHDLST RVWGALDVVP LPEDDSCDQE ANESYGDERR LITERSPMPA  240
PPPCLDAPRS SAFSMDANAA HTPPSSHSSK KRSLSPLLGM GDGHLDPSSS PCGSPSRRLR  300
ISTESTVVTL AAAAAAAAAA TLWSDVDGGH EDVQSPESTG VAVDLGRGDV QGLQPSDGGC  360
HGVAPNYPKR WSDAEEVTLL AAAAFFRERT GRSPLPIDAG ALFDSIRDSV SPRINEANVS  420
YKLTRFRSKF LHSAPEKSAT AHDRLLHDLS AKSWGSVNTV AREARDAATK TPVVTEVLEA  480
RDAATKMPVV TEVLREYWKM NELAGLSLEK GLSLLWRKNG RLIETRWRKQ FDGEMKTQMR  540
WHDLAKEICG LLNDTIKGLG T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G311200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454616.10.0uncharacterized protein LOC8075205
TrEMBLA0A1Z5RPV20.0A0A1Z5RPV2_SORBI; Uncharacterized protein
STRINGSb04g034350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.17e-08DNA-binding storekeeper protein-related transcriptional regulator