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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.004G303600.1.p |
| Common Name | Sb04g033680, SORBIDRAFT_04g033680 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
MYB |
| Protein Properties |
Length: 306aa MW: 32354.7 Da PI: 5.5368 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.004G303600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49 | 1.4e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEd++l d++ ++G g+W++ +++ g++R +k+c++rw +yl
Sobic.004G303600.1.p 15 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLHRNGKSCRLRWINYL 62
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 57.1 | 4.2e-18 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g +++eE+e +++ lG++ W++Iar+++ gRt++++k++w++yl
Sobic.004G303600.1.p 69 GTFSPEEEETVMSLHATLGNK-WSRIARHLP-GRTDNEVKNHWNSYL 113
78*******************.*********.*************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MGCKACDKPK PNYRKGLWSP EEDQKLRDYI LLHGHGCWSA LPAKAGLHRN GKSCRLRWIN 60
YLRPGLKHGT FSPEEEETVM SLHATLGNKW SRIARHLPGR TDNEVKNHWN SYLKKRVEGK 120
EGRPSTPAPA AATDSGTDSD DSHCVKPGDG GAAQEAPADS GSSEPRESSS ADSSCLTDPP 180
AACRPHALVA APKVMFADWL DTDYYMGCGG GGGGGGPPPA VAAPGLGAAA AAGVDRDQQH 240
QVMSQGSVQQ VDGPSGVDVS SLHGFGDSGA SCWEFQENFD DGIDDQLQTA GFCDLLSMSD 300
YFGLN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HF679412 | 0.0 | HF679412.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB6 protein. |
