PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G300300.1.p
Common NameSb04g033380, SORBIDRAFT_04g033380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 251aa    MW: 27787.6 Da    PI: 4.7897
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G300300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1853106456
                           -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Sobic.004G300300.1.p  53 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106
                           458**************8899********************************9 PP
2HD-ZIP_I/II121.44.6e-3951144193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                           e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ ++L++e+ +L+
  Sobic.004G300300.1.p  51 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRARYDALHARVDSLREEKLALA 139
                           69*****************9999****************************************************************** PP

           HD-ZIP_I/II  89 eelke 93 
                           ++++e
  Sobic.004G300300.1.p 140 KQVDE 144
                           99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1743110IPR009057Homeodomain-like
PROSITE profilePS5007117.21647108IPR001356Homeobox domain
SMARTSM003894.7E-1750112IPR001356Homeobox domain
PfamPF000461.4E-1553106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-1953115IPR009057Homeodomain-like
CDDcd000866.73E-1656109No hitNo description
PRINTSPR000316.1E-77988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000316.1E-788104IPR000047Helix-turn-helix motif
PfamPF021831.2E-15108150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MERGDDCQFM VVHQYDEAAQ LMHQLMVAAA GDQQDPNAGA AGRGAGGGGG ERKRRFTEEQ  60
VRSLETTFHA RRAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDYAALRAR  120
YDALHARVDS LREEKLALAK QVDELRGRLQ SVSERQDQSG SCEVNDAADD GKRNLNSTTT  180
TCLVLVQEDD GATPPAAVDA SGSEDSAATE YGYGYDYDHV VAYGEGLHDP LCATPDLWDT  240
WPLLEWNAVA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.107570.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G300300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452838.10.0homeobox-leucine zipper protein HOX24
SwissprotA2X7U13e-85HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLC5XS340.0C5XS34_SORBI; Uncharacterized protein
STRINGSb04g033380.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Representative plantOGRP1459844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-31homeobox 7