|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.004G298400.1.p |
Common Name | Sb04g033240, SORBIDRAFT_04g033240 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
Family |
WRKY |
Protein Properties |
Length: 239aa MW: 26109.6 Da PI: 8.1645 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G298400.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 100.3 | 1.2e-31 | 162 | 220 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vk+s +prsY+rCt+++C+vkk+ver ++d ++v +tYeg+H+h+
Sobic.004G298400.1.p 162 LDDGYKWRKYGQKVVKNSLHPRSYFRCTHSNCRVKKRVERLSTDCRMVMTTYEGRHTHS 220
59********************************************************7 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MQAYMEGGQL SACLPGFLVP DHYAFPLPLP LQLPSSQNKL FQMPFVVDQE AETENHGGGG 60 MLSSDHCGLY PLPALPFGSC SGAAGAATAC GGKPTAGFMP SAIVAEEVCT SVTTKLGCND 120 SNGTWWKGSA ATTIAERGKM KVRRKMREPR FCFQTRSDVD VLDDGYKWRK YGQKVVKNSL 180 HPRSYFRCTH SNCRVKKRVE RLSTDCRMVM TTYEGRHTHS PCSDDASSAD HTDCFTSF*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KC191597 | 0.0 | KC191597.1 Miscanthus lutarioriparius zinc finger transcription factor WRKY12 mRNA, complete cds. |