PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G295600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 265aa    MW: 28097 Da    PI: 4.7342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G295600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-1976125255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  Sobic.004G295600.1.p  76 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 125
                           69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-2276133IPR016177DNA-binding domain
PROSITE profilePS5103223.18276133IPR001471AP2/ERF domain
SMARTSM003801.2E-3776139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3276134IPR001471AP2/ERF domain
PfamPF008476.1E-1376125IPR001471AP2/ERF domain
PRINTSPR003671.4E-107788IPR001471AP2/ERF domain
CDDcd000183.73E-3377134No hitNo description
PRINTSPR003671.4E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSLLVTASFA QCSSPTMEEE RALSPVSDAC TTCSSSGAGT TGPNSPVSSS SQSLDDTSGG  60
GSSSRKRPRR ELKHPTYRGV RMRAWGKWVS EIREPRKKSR IWLGTFDTPE MAARAHDVAA  120
LAIKGRAAHL NFPEMSHELP RAASAAPEDV RAAAALAAAM DRRESVAPLP TSSDSSHGAR  180
NDESEEPAAS SSSGNDADDS VQSDEPAAPP SEHSMLVDGH ILDLALFELP DVLLEFGFAL  240
PPPPSSTSCG YDLSWDEPLL LWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18741331272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G295600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701800.0EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315933.10.0ethylene-responsive transcription factor ERF043
TrEMBLA0A194YS750.0A0A194YS75_SORBI; Uncharacterized protein
STRINGGRMZM2G041839_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.17e-38ERF family protein