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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.004G294100.1.p |
| Common Name | Sb04g032800, SORBIDRAFT_04g032800 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
C2H2 |
| Protein Properties |
Length: 338aa MW: 34924.8 Da PI: 6.0392 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.004G294100.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.8 | 1.9e-05 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C+ C+++F ++ L H+r+H
Sobic.004G294100.1.p 5 TCKLCSRRFASPRALAGHMRSH 26
6********************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50157 | 10.305 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0078 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 8.02E-6 | 5 | 26 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 6.5E-5 | 6 | 27 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 8.02E-6 | 179 | 203 | No hit | No description |
| SMART | SM00355 | 170 | 184 | 204 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 1.0E-7 | 186 | 208 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 2.8E-12 | 249 | 271 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 8.6 | 249 | 271 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 2 | 249 | 271 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 251 | 271 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MAKNTCKLCS RRFASPRALA GHMRSHSIAR AQAAAAAAKQ QISSASSAST SFAAVADEDV 60
GLKTPAASTY GLRENPKRSL RVADAAFSDR ESEAESTPPH AKRVNAAPVW GEPEPASSLS 120
EVSTPEDVAL SLMMLSRDSW PSAVLAEDDG SDDGSDDGYA PPPAPPLPRA PTPAPPPVEK 180
RTQFMCVACK KVFRSYQALG GHRASNVRGG RGGCCAPPPQ PPLSPLPEHR DGDGDEDEDM 240
DMDAKQQPRE CPHCYRVFPS GQALGGHKRS HVCGAAAAAS SLAGTGTATA TASTTSPAAT 300
PPSPINNCPC MIDLNVAPPS EDAELSAVSD PHFNPGA*
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