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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.004G284400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
Dof |
| Protein Properties |
Length: 458aa MW: 45947 Da PI: 9.3998 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.004G284400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 124.6 | 3.1e-39 | 158 | 219 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
Sobic.004G284400.1.p 158 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 219
7899******************************************************9875 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009639 | Biological Process | response to red or far red light |
| GO:0009845 | Biological Process | seed germination |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 458 aa
Download sequence Send
to blast |
MKEKTREGAG SNSTTQAIHR TFLLPRPSHP VVPAVGGSSS SSSSSSSPVV VLSSSSSSPL 60
VGKRNTGESL ARSGIGILAC MDAAQWHQGL GLGKPMEEML MAGNANPNQN PNPPPPAPSA 120
PGAQRAGAPA AGAAAAPSAG ATGGPAGAGT ERRARPQKEK ALNCPRCNST NTKFCYYNNY 180
SLQQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRSSSA VSSAAAASTS AAMSGTVSVG 240
LPAKNPKLMH EGAHDLNLAF PHHNGRALQP PEFPAFPSLE SSSVCNPGAA GMVGNGAAGR 300
GMGALSAMEL LRSTGCYVPL QHVQLGMPAE YAAAGFALGE FRMPPPPQSH SVLGFSLDTH 360
GTGGVGGAGG YSAGLQDSAA GRLLFPFEDL KPAVSAAAGG GGASNGADHH QYEHSKDQAA 420
GDGGSGPSGV TGGHETPGFW SNSLIGNGSS NGGGGPW*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC582410 | 0.0 | KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds. |
