PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G281800.1.p
Common NameSb04g031820, SORBIDRAFT_04g031820
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 282aa    MW: 30879.7 Da    PI: 9.508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G281800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.3e-133680147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Sobic.004G281800.1.p 36 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 80
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-173086IPR009057Homeodomain-like
PROSITE profilePS5129415.4083185IPR017930Myb domain
TIGRFAMsTIGR015571.2E-183483IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.8E-73486IPR009057Homeodomain-like
SMARTSM007175.3E-113583IPR001005SANT/Myb domain
PfamPF002492.1E-113680IPR001005SANT/Myb domain
CDDcd001671.39E-83881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVSASAPPPP LQSDAAGSGE DASKKVRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK  60
IEAFVGSKTV IQIRSHAQKY FLKVQKNGTS EHVPPPRPKR KAAHPYPQKA SKNEPNYGLK  120
TDSSSIHRNS GMNVSVSSWA HSSIPQAVAS TMVKDLGAGT PGPNNFCSSS TEGPPRTWQP  180
GETNDQINQV PSLRLMPDFA EVYSFLGSVF DPSTSGHLQK LKEMNPIDVE TALLLMRNLS  240
INLTSPDFED QRKLLSSYST SDGLQLGSSR SSALAMSTPF M*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G281800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794460.0HF679446.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB40 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313806.10.0protein REVEILLE 6 isoform X4
SwissprotQ8H0W31e-100RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A194YRZ70.0A0A194YRZ7_SORBI; Uncharacterized protein
STRINGSb04g031820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.29e-89MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]