PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G275500.1.p
Common NameSb04g031250, SORBIDRAFT_04g031250
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 350aa    MW: 37173.8 Da    PI: 6.1261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G275500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-1398149155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ +  Lr+++P+    + ++ + a+i+  A+e++k+L+
  Sobic.004G275500.1.p  98 QRMTHIAVERNRRRQMNEYLTALRSIMPET---YVQRGDQASIVGGAIEFVKELE 149
                           79***************************9...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.06E-1396153No hitNo description
SuperFamilySSF474591.7E-1796172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.03497148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1498162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-1198149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSALVDALCA APPPSDAAAL VYDTFNAASF LFDTAAFCDG AGIVVAPASA HQQQQQAAVE  60
EAPAGEAQAA TTTSTTTRVR KRRRRARSCK SREETETQRM THIAVERNRR RQMNEYLTAL  120
RSIMPETYVQ RGDQASIVGG AIEFVKELEQ QLQCLEAQKR KLLAAARPDA TPMHASSGSG  180
STRTCCADSA TAATTSNCSS SVTEDAAEHA HAPPPPFAQF FTYPQYVWCH SARNPAAAEG  240
EEDGRRSGVA DVEVTLVETH ASVRVMTTRR PGQLLSLVTG LQALRLAVLH LSVTTLDALV  300
LHSISVKVEE GCGLATADDI AAAVHHVLCI IDAEATEQQL LAAAGPQPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983RKRRR
27986RKRRRRAR
398109RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G275500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386550.0BT038655.1 Zea mays full-length cDNA clone ZM_BFb0304G04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454447.10.0transcription factor bHLH96
TrEMBLC5Y0S00.0C5Y0S0_SORBI; Uncharacterized protein
STRINGSb04g031250.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-27bHLH family protein