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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.004G271800.1.p |
Common Name | Sb04g030930, SORBIDRAFT_04g030930 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 498aa MW: 51619.5 Da PI: 5.9839 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G271800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 97.3 | 1e-30 | 232 | 290 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
Sobic.004G271800.1.p 232 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSLLVITYNSEHNHP 290
699************************998****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 498 aa
Download sequence Send
to blast |
MCDYFLQRME GDQHHQAGDL TDVVRAGGAM HQQGAIAELS SSTATGWQLP AEPAPAGPGL 60 FLPPQPSSSD GGDGFADAFA GLPDPFASDF VRASSSSGGG PVPAADFFDF EAPAAAVGGG 120 ARRGGGGVLV DSGGGGVVVE RGVPQMPALS PREIRPYPVT MIGGDTVKIG VPTMMPGLAV 180 GPACAFDAIA GLQMPSPHGG GIKRRKNQAR KVVCIPAPAA AGGRTTGEVV PSDLWAWRKY 240 GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRTDPSLLV ITYNSEHNHP WPTQRNALAG 300 STRSHHAKNS KNNPSQHNLQ KPDLKAEPEH HQASAAVVPT GCATTATTAA TSTTTTATTS 360 TTSNSTPPPA TMAVKEEAMV GSEMEKGMDH DASVLLDHGD LMQQMFSQSY YRPMIPEAGG 420 GGGGHHADDF FADLAELESD PMSLIFPGGG DPGKEKEMMP NKSLGADPLF GMLDWGATNN 480 GVATSAGSSF EQDESGW*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT061983 | 0.0 | BT061983.1 Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds. |
GenBank | KJ727799 | 0.0 | KJ727799.1 Zea mays clone pUT5751 WRKY transcription factor (WRKY11) mRNA, partial cds. |