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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.004G269900.1.p |
| Common Name | Sb04g030770, SORBIDRAFT_04g030770 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GRF |
| Protein Properties |
Length: 407aa MW: 43085 Da PI: 7.5304 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.004G269900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 77.9 | 9.8e-25 | 123 | 167 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
Sobic.004G269900.1.p 123 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET 167
79****************************************997 PP
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| 2 | QLQ | 60.8 | 3.9e-21 | 60 | 95 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
+FT+aQ ++L++Q+l+yKyL+a++PvPp+L+++i++
Sobic.004G269900.1.p 60 PFTPAQYEELEQQALIYKYLVAGVPVPPDLVVPIRR 95
9*********************************86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MAMPYASLSP AGADHRSSTA TAASLLPFCR STPLSAGGGG GLGEDAQLSS RWPAARPVVP 60
FTPAQYEELE QQALIYKYLV AGVPVPPDLV VPIRRGLDSL ATRFYGHPTL GGYGTYYLGK 120
KLDPEPGRCR RTDGKKWRCS KEAAPDSKYC ERHMHRGRNR SRKPVETQLV PQSQPPATAA 180
AVSAAPPLAL AAATTTTNGS CFQNHSLYPA IAGSTGGGGG ASNISTPFSS SMGSSQLHMD 240
NAASYAALGG GTAKDLRYNA YGIRSLAEEH NQLIAEAIDS SMENQWRLPP SQTSSFPLSS 300
YPQLGALSNL GQSTVTSLSK MERQQPLSFL GNSEFGAMES AAKQQENQTL RPFFDEWPKA 360
RDSWPGLSDD NAASLAPSFP ATQLSMSIPM ASSDFSVASS QSPNDD*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in developing leaves. {ECO:0000269|PubMed:24854713, ECO:0000269|Ref.1}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that plays a role in the regulation of cell expansion in developing leaves (PubMed:26036253). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function and the transition between cell division and cell expansion in growing leaves (PubMed:26036253). {ECO:0000269|PubMed:26036253}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727972 | 0.0 | KJ727972.1 Zea mays clone pUT6086 GRF transcription factor (GRF6) mRNA, partial cds. |
