 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.004G256200.1.p |
| Common Name | Sb04g029480, SORBIDRAFT_04g029480 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
CO-like |
| Protein Properties |
Length: 407aa MW: 44561.5 Da PI: 4.9287 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.004G256200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 21.3 | 5.6e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
C+ +++++ ++C+++ lC +C + H+ Ht++
Sobic.004G256200.1.p 4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
7*****************************657888889876 PP
|
| 2 | zf-B_box | 28.2 | 4e-09 | 47 | 88 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
C+++++++++ C +++ lC++C ++H H+++
Sobic.004G256200.1.p 47 LCDRCGSQPASVRCLEDNASLCQNCDWNGHDAasgasgHKRQ 88
7*****************************447778888876 PP
|
| 3 | CCT | 62.5 | 1.3e-21 | 349 | 392 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+
Sobic.004G256200.1.p 349 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 392
899*************************************9975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MASLCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPASVRC 60
LEDNASLCQN CDWNGHDAAS GASGHKRQAI NCYSGCPSSA ELSRIWSFIM DIPTVPAEPN 120
CEDGLSMMTI DDSDVTNHHD ASDDKRLLEI ANTTLMSDPP SADKPKPLIS SSSGDGFDVL 180
PLATDQPAGS VSVTPKVPYA RDDDNFNDGM YEDLCVDDAD MTFENYEELF GTSHIRTEEL 240
FDDAGIDSYF EMKETQPFDF NEEPKTMQLE CSNVVSADCG MLNPGARADS SLCIPVRQVR 300
SSISHSLSGL TGESSAGDHQ DCGVSPMLLM GEPPWHSPGP EGSVAGGSRD SALTRYKEKK 360
KRRKFDKKIR YASRKARADV RKRVKGRFIK AGEAYDYDPL SQTRSY*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 358 | 362 | KKKRR |
| 2 | 358 | 363 | KKKRRK |
| 3 | 359 | 363 | KKRRK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT035398 | 0.0 | BT035398.1 Zea mays full-length cDNA clone ZM_BFb0059C10 mRNA, complete cds. |
| GenBank | EU972243 | 0.0 | EU972243.1 Zea mays clone 378354 zinc finger protein CONSTANS-LIKE 11 mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G48250.1 | 2e-96 | B-box type zinc finger protein with CCT domain |
