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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G251300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 298aa MW: 32936.8 Da PI: 4.303 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 34 | 87 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k Sobic.004G251300.2.p 34 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 87 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 4e-42 | 33 | 124 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal+++++ + +++++Lr+ Sobic.004G251300.2.p 33 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDVILQDNHRLRS 121 69**************************************************************************************9 PP HD-ZIP_I/II 90 elk 92 ++ Sobic.004G251300.2.p 122 QVV 124 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.76E-20 | 28 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.22 | 29 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-20 | 32 | 93 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.5E-18 | 34 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.85E-20 | 34 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-22 | 35 | 96 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-6 | 60 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 64 | 87 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-6 | 69 | 85 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.1E-17 | 89 | 131 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MLGLEEGRGV KRPFFTSPDE LLEEEYYDEQ LPEKKRRLTP EQVHLLERSF EEENKLEPER 60 KTELARKLGL QPRQVAVWFQ NRRARWKTKQ LERDFDRLKA SFDALRADHD VILQDNHRLR 120 SQVVSLTEKL QEKEATEGGA SAATDAAAAL PAVDDVKASL ADDVEEPTEP AAEEEEAAFE 180 VQQVKSEDRL STGSGGSAVV DTDALLYGAG CRFAAAVDSS VESYFPGGED HHYHDCGMGP 240 VNHGAGGGIQ SDDDGAGSDE GCSYYAEEEA AAFFAGHTHH HADDDEDAGQ ISWWMWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 89 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.3331 | 2e-57 | callus| embryo| shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G251300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067017 | 0.0 | BT067017.1 Zea mays full-length cDNA clone ZM_BFb0151L17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314789.1 | 0.0 | homeobox-leucine zipper protein HOX16-like isoform X2 | ||||
Swissprot | A2X980 | 1e-124 | HOX16_ORYSI; Homeobox-leucine zipper protein HOX16 | ||||
Swissprot | Q6YWR4 | 1e-124 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A194YSM2 | 0.0 | A0A194YSM2_SORBI; Uncharacterized protein | ||||
STRING | Sb04g029080.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-61 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G251300.2.p |
Publications ? help Back to Top | |||
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