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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.004G233200.1.p |
Common Name | Sb04g027660, SORBIDRAFT_04g027660 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 332aa MW: 35734.8 Da PI: 6.6326 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G233200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 160 | 209 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g
Sobic.004G233200.1.p 160 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 209
59******9.**********965...5*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MAAAIDMYKY YNAHQIASSS PSDEELAKAL EPFITSASSS SPYHRYSSSP SMSQDSYMPT 60 PSYTSFATSP LPTPAATSSS SSPFSQLPPL YSSPYAAPSM VGQMGLNQLG PAQIQQIQAQ 120 FMFQQQQQQQ RGLHAAFLGP RAQPMKQSGS PPLAPAQSKL YRGVRQRHWG KWVAEIRLPK 180 NRTRLWLGTF DTAEDAALAY DKAAFRLRGD MARLNFPALR RDGAHLAGPL HASVDAKLTA 240 ICQSLTGSKN GGSSGDESAG SPPDSPKCSA SASTEGEEES GSAGSPPSPT LAPPVPEMAK 300 LDFTEAPWDE TETFHLRKYP SWEIDWDSIL S*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ805750 | 0.0 | FJ805750.1 Zea mays DRE-binding protein 2 (DBP2) mRNA, complete cds. |