PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G228400.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 328aa MW: 34642.2 Da PI: 8.5854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G228400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.3e-13	135	186	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+ +P++ ++++ + a+i+ A++++k+L+ Sobic.004G228400.2.p 135 QRRNHIAVERNRRRQMNEYLSVLRSAMPPS---YAQRGDQASIVAGAINFVKELE 186 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.90E-13	133	190	No hit	No description
SuperFamily	SSF47459	1.31E-16	133	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.377	134	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	135	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-11	135	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-9	140	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MALEAVVFPK EHLVCTVKAR SASLGCGFHT EELEDKGGEV LQGEAADALL PPGADAGAGT 60 MWEWDAVLCP CSTAPGAVEE CWDVQHQLSV SPPPPAVPSA VAASSSGRGK AAAASARRRR 120 RRPKAVKNTE EMESQRRNHI AVERNRRRQM NEYLSVLRSA MPPSYAQRGD QASIVAGAIN 180 FVKELEQLLQ SLEAQKRRQG GCTEPPPPAA PFAGFFTFPQ YSTTATGVVG SSDSASSGGE 240 QNGGGCAGAG ARRGVADIEV ALAESHANVK VLAPRRPRQL LRMVVALQCL GLTVLHLNVT 300 TTADHLAFYS LSLKVTNAQA RRVSHSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	121	RRRRRR
2	136	146	RNHIAVERNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.12497	0.0	ovary

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G228400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038106	0.0	BT038106.1 Zea mays full-length cDNA clone ZM_BFb0212B15 mRNA, complete cds.
GenBank	KJ726873	0.0	KJ726873.1 Zea mays clone pUT3414 bHLH transcription factor (bHLH161) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021314326.1	0.0	transcription factor bHLH94-like
Swissprot	Q9SK91	2e-57	BH094_ARATH; Transcription factor bHLH94
TrEMBL	A0A194YSA2	0.0	A0A194YSA2_SORBI; Uncharacterized protein
STRING	Sb04g027280.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	9e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.004G228400.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]