PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G228400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 351aa    MW: 37004.9 Da    PI: 6.7021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G228400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13135186155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +rr+h ++Er+RR+++N+ ++ Lr+ +P++   ++++ + a+i+  A++++k+L+
  Sobic.004G228400.1.p 135 QRRNHIAVERNRRRQMNEYLSVLRSAMPPS---YAQRGDQASIVAGAINFVKELE 186
                           79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16133202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-13133190No hitNo description
PROSITE profilePS5088815.377134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13135197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MALEAVVFPK EHLVCTVKAR SASLGCGFHT EELEDKGGEV LQGEAADALL PPGADAGAGT  60
MWEWDAVLCP CSTAPGAVEE CWDVQHQLSV SPPPPAVPSA VAASSSGRGK AAAASARRRR  120
RRPKAVKNTE EMESQRRNHI AVERNRRRQM NEYLSVLRSA MPPSYAQRGD QASIVAGAIN  180
FVKELEQLLQ SLEAQKRRQG GCTEPPPPAA PFAGFFTFPQ YSTTATGVVG SSDSASSGGE  240
QNGGGCAGAG ARRGVADIEV ALAESHANVK VLAPRRPRQL LRMVVALQCL GLTVLHLNVT  300
TTADHLAFYS LSLKMEDECR LSSVDDIAAA VNEILAKISD ECAASHLLAA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121RRRRRR
2136146RNHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.124970.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G228400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381060.0BT038106.1 Zea mays full-length cDNA clone ZM_BFb0212B15 mRNA, complete cds.
GenBankKJ7268730.0KJ726873.1 Zea mays clone pUT3414 bHLH transcription factor (bHLH161) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314326.10.0transcription factor bHLH94-like
TrEMBLA0A194YR510.0A0A194YR51_SORBI; Uncharacterized protein
STRINGSb04g027280.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-51bHLH family protein