PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G201600.1.p | ||||||||
Common Name | Sb04g024780, SORBIDRAFT_04g024780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 400aa MW: 44739.4 Da PI: 5.3066 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.6 | 2.2e-27 | 57 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 lp+G++F+P++ el+ ++L++kv + +e+i+++d i++++P++Lp +k++ ++ +fF++ +++y g rk+r Sobic.004G201600.1.p 57 LPAGVKFDPSELELL-QHLEQKVGLGGsrphvlI--DEFIPTIDndegICYSHPENLP-GIKTDGSNAHFFHRVSNAYGCGLRKRRRii 141 799************.99****976665666443..333444433445**********.7788999********************668 PP NAM 78 ........tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ +W++tg++k++++ +g +g +k++v+yk+ r k+ +++Wvmh+y+l Sobic.004G201600.1.p 142 ncnnhtvpDEHVRWHKTGRSKAICD-NGVIKGWRKIMVLYKAsqRGGKPDRANWVMHQYHL 201 9988877766999************.999***********7612555666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-34 | 41 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.96 | 57 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-11 | 58 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MARSWLITGR GIAKKIRYAA PSANRQIREL IAEARRECPN CSYVIDNSDV AMQWPGLPAG 60 VKFDPSELEL LQHLEQKVGL GGSRPHVLID EFIPTIDNDE GICYSHPENL PGIKTDGSNA 120 HFFHRVSNAY GCGLRKRRRI INCNNHTVPD EHVRWHKTGR SKAICDNGVI KGWRKIMVLY 180 KASQRGGKPD RANWVMHQYH LGEEEDEKDG ELVVSKVFCQ LPNKSMEICE TETAYEEPDA 240 PASVIGPKTP KTNAPQPRHP KNSPCETEQN IPILQDQLLL DSKGEPTMPI ISLEDDATNP 300 VWCAIAEEQQ VVGEASRAQL NSDEPLLCHE DPNSLNDKAL LPLDYPILSQ CRNEMLDWNL 360 NGHGLPDLHN VDLGTPPDFQ LADFQFGSQE SLGSWLDRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G201600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962435 | 0.0 | EU962435.1 Zea mays clone 242654 ANAC044 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454112.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Swissprot | Q6NQK2 | 2e-78 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | C5XWJ0 | 0.0 | C5XWJ0_SORBI; Uncharacterized protein | ||||
STRING | Sb04g024780.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 7e-76 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G201600.1.p |
Entrez Gene | 8056470 |