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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G200866.1.p | ||||||||
Common Name | Sb09g020320, SORBIDRAFT_09g020320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 413aa MW: 43651.8 Da PI: 8.1494 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.3 | 8.2e-14 | 138 | 199 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ + +L ++++ + e a+l+++ Sobic.004G200866.1.p 138 EEDKRRTARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSKISFIAAENATLRQK 199 5677899**********************************99*************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-14 | 137 | 202 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.6E-12 | 139 | 200 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.128 | 140 | 200 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-11 | 142 | 200 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.4E-16 | 142 | 200 | No hit | No description |
CDD | cd14704 | 1.99E-19 | 143 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
CDGLDFDLPV DFSIDDFLLR SPDRGDDGDD SGEGSAAGSG PTASSSASPA TSGANSAVAN 60 AGVHEVKHED SDEGRSGAAP NWSLKRKQAR AISDGAKCRR SGDGELSPSA SASASASASA 120 SRAVAEDSDE RCAGGEEEED KRRTARLMRN RESAQLSRQR KKRYVEELEE KVKSMHSVIN 180 DLNSKISFIA AENATLRQKL GGAGVSSPPP GVYPPPPLPG IHFPWVPGYA MRPHGSHVPL 240 VPIPRLKPHK SKTKTKKVAS ISLLGLLFVA LVFGAFVPGF NHSLGMRGMS DNMMFGNFGH 300 SDARVFSVTN HGKGPKGGLN SSDVISTDPG MITGHADGAG QKHRAANSSS EILPALFEKA 360 VAHKASNGQS VKDRKEISVA IARYLSPPGM DLNSKETLPP DAPLPQWFRE GME |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 162 | KRRTARLMRNRESAQLSRQRKKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf blade, and at lower levels in roots, leaf sheaths, flowers and seeds. {ECO:0000269|PubMed:22084314}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G200866.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055934 | 1e-149 | BT055934.1 Zea mays full-length cDNA clone ZM_BFc0047P18 mRNA, complete cds. | |||
GenBank | BT067808 | 1e-149 | BT067808.1 Zea mays full-length cDNA clone ZM_BFc0160D20 mRNA, complete cds. | |||
GenBank | EU957545 | 1e-149 | EU957545.1 Zea mays clone 1597058 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ727605 | 1e-149 | KJ727605.1 Zea mays clone pUT5465 bZIP transcription factor (bZIP34) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441096.1 | 0.0 | bZIP transcription factor 39 | ||||
Swissprot | Q6AU90 | 1e-144 | BZP39_ORYSJ; bZIP transcription factor 39 | ||||
TrEMBL | A0A1Z5RNT0 | 0.0 | A0A1Z5RNT0_SORBI; Uncharacterized protein (Fragment) | ||||
STRING | Sb09g020320.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8228 | 35 | 45 | Representative plant | OGRP2171 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56660.1 | 7e-30 | basic region/leucine zipper motif protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G200866.1.p |
Entrez Gene | 8085134 |
Publications ? help Back to Top | |||
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