|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.004G200866.1.p |
Common Name | Sb09g020320, SORBIDRAFT_09g020320 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
Family |
bZIP |
Protein Properties |
Length: 413aa MW: 43651.8 Da PI: 8.1494 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G200866.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 43.3 | 8.2e-14 | 138 | 199 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ + +L ++++ + e a+l+++
Sobic.004G200866.1.p 138 EEDKRRTARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSKISFIAAENATLRQK 199
5677899**********************************99*************999997 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 413 aa
Download sequence Send
to blast |
CDGLDFDLPV DFSIDDFLLR SPDRGDDGDD SGEGSAAGSG PTASSSASPA TSGANSAVAN 60 AGVHEVKHED SDEGRSGAAP NWSLKRKQAR AISDGAKCRR SGDGELSPSA SASASASASA 120 SRAVAEDSDE RCAGGEEEED KRRTARLMRN RESAQLSRQR KKRYVEELEE KVKSMHSVIN 180 DLNSKISFIA AENATLRQKL GGAGVSSPPP GVYPPPPLPG IHFPWVPGYA MRPHGSHVPL 240 VPIPRLKPHK SKTKTKKVAS ISLLGLLFVA LVFGAFVPGF NHSLGMRGMS DNMMFGNFGH 300 SDARVFSVTN HGKGPKGGLN SSDVISTDPG MITGHADGAG QKHRAANSSS EILPALFEKA 360 VAHKASNGQS VKDRKEISVA IARYLSPPGM DLNSKETLPP DAPLPQWFRE GME
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 140 | 162 | KRRTARLMRNRESAQLSRQRKKR |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf blade, and at lower levels in roots, leaf sheaths, flowers and seeds. {ECO:0000269|PubMed:22084314}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT055934 | 1e-149 | BT055934.1 Zea mays full-length cDNA clone ZM_BFc0047P18 mRNA, complete cds. |
GenBank | BT067808 | 1e-149 | BT067808.1 Zea mays full-length cDNA clone ZM_BFc0160D20 mRNA, complete cds. |
GenBank | EU957545 | 1e-149 | EU957545.1 Zea mays clone 1597058 DNA binding protein mRNA, complete cds. |
GenBank | KJ727605 | 1e-149 | KJ727605.1 Zea mays clone pUT5465 bZIP transcription factor (bZIP34) mRNA, partial cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] - Ohta M, et al.
Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] - Cheng Q, et al.
An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]
|