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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G184200.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 496aa MW: 51945.2 Da PI: 4.8839 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.4e-12 | 318 | 363 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ + +Ka++Le+ +eY+k Lq Sobic.004G184200.4.p 318 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLEEIIEYVKFLQ 363 99***********************7.....59*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.39E-13 | 311 | 367 | No hit | No description |
SuperFamily | SSF47459 | 8.11E-17 | 311 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.104 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 315 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-9 | 318 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-13 | 319 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MGGFVDPFVP ESAWPQDTMF IGSSWPAAGP AGTYLGGAGA AAPDQLHLQN VSSSSTGALL 60 NGSAKEIVSL SPVEELHEQF LSAHLPLPAD DVAPQGLNFE VDSVVLSTPC AISLADSAPV 120 VCCSSNDSSG SEQSGLPPFL LLGVGEQQPA WAPSTFPRIS SLVGEETSQS CFGFSNHLLR 180 EASCAADAKK YPQLGDLPSA PLQLHDDVEF DTGKMLSFTP GLGQQLNAST NFGDLQLSQK 240 EFSGLHHLNL SGQQLPSFNA TGATHNPEQS SEVSSGKIGL NAPPFMNRQE VANGNGAAGS 300 GAPKPRVRAR RGQATDPHSI AERLRREKIS DRMKNLQELV PNSNRTDKAS MLEEIIEYVK 360 FLQLQVKVLS MSRLGATEAV VPLLTESQTE SSGGLLLSPR SGSSGRQRAG GGSLPSSEAR 420 DGAAFEQEVA QLMENNMTTA MQYLQSKGLC LMPIALASAI SDQKGSSSAA VQPENGGAKE 480 MLRAVKPLGS PIQGR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.16108 | 0.0 | callus| ovary |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G184200.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974956 | 0.0 | EU974956.1 Zea mays clone 461679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313857.1 | 0.0 | uncharacterized protein LOC110434329 isoform X1 | ||||
Refseq | XP_021313858.1 | 0.0 | uncharacterized protein LOC110434329 isoform X2 | ||||
Refseq | XP_021313859.1 | 0.0 | uncharacterized protein LOC110434329 isoform X2 | ||||
Refseq | XP_021313860.1 | 0.0 | uncharacterized protein LOC110434329 isoform X2 | ||||
Refseq | XP_021313861.1 | 0.0 | uncharacterized protein LOC110434329 isoform X2 | ||||
TrEMBL | A0A194YQI6 | 0.0 | A0A194YQI6_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A194YRK2 | 0.0 | A0A194YRK2_SORBI; Uncharacterized protein | ||||
STRING | Sb04g023320.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 3e-55 | LJRHL1-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G184200.4.p |