PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G184200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 496aa    MW: 51945.2 Da    PI: 4.8839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G184200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12318363555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR++i +++ +L+el+P++      + +Ka++Le+ +eY+k Lq
  Sobic.004G184200.2.p 318 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLEEIIEYVKFLQ 363
                           99***********************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.39E-13311367No hitNo description
SuperFamilySSF474598.11E-17311374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.104313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16315373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9318363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGGFVDPFVP ESAWPQDTMF IGSSWPAAGP AGTYLGGAGA AAPDQLHLQN VSSSSTGALL  60
NGSAKEIVSL SPVEELHEQF LSAHLPLPAD DVAPQGLNFE VDSVVLSTPC AISLADSAPV  120
VCCSSNDSSG SEQSGLPPFL LLGVGEQQPA WAPSTFPRIS SLVGEETSQS CFGFSNHLLR  180
EASCAADAKK YPQLGDLPSA PLQLHDDVEF DTGKMLSFTP GLGQQLNAST NFGDLQLSQK  240
EFSGLHHLNL SGQQLPSFNA TGATHNPEQS SEVSSGKIGL NAPPFMNRQE VANGNGAAGS  300
GAPKPRVRAR RGQATDPHSI AERLRREKIS DRMKNLQELV PNSNRTDKAS MLEEIIEYVK  360
FLQLQVKVLS MSRLGATEAV VPLLTESQTE SSGGLLLSPR SGSSGRQRAG GGSLPSSEAR  420
DGAAFEQEVA QLMENNMTTA MQYLQSKGLC LMPIALASAI SDQKGSSSAA VQPENGGAKE  480
MLRAVKPLGS PIQGR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.161080.0callus| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G184200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749560.0EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313857.10.0uncharacterized protein LOC110434329 isoform X1
RefseqXP_021313858.10.0uncharacterized protein LOC110434329 isoform X2
RefseqXP_021313859.10.0uncharacterized protein LOC110434329 isoform X2
RefseqXP_021313860.10.0uncharacterized protein LOC110434329 isoform X2
RefseqXP_021313861.10.0uncharacterized protein LOC110434329 isoform X2
TrEMBLA0A194YQI60.0A0A194YQI6_SORBI; Uncharacterized protein
TrEMBLA0A194YRK20.0A0A194YRK2_SORBI; Uncharacterized protein
STRINGSb04g023320.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-55LJRHL1-like 3