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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.004G151500.3.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 249aa MW: 28055 Da PI: 10.28 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G151500.3.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 36.2 | 1.5e-11 | 125 | 166 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
+GV++ k+ +W A I++ +k+++lg+ gt +eAa+++++a+
Sobic.004G151500.3.p 125 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 166
79**98..47*********4.....5********************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MIVDRAILCS RMSVWRLIAR RGGISSMVSL RRRRLLGLCS GKDSLPVDLP KPIENEKTVE 60 VVHSNVKPFS VHPLPLAKTS DVLTKSSNGS DDSKEEKTQY YPGKEIKRRK RHRRKQYVDQ 120 EPCIMRGVYF KNMKWQAAIK VDKKQIHLGT VGTQDEAARL YDRAAFMCGR EPNFELSEEE 180 KQELRKYTWE GFLAVTRNTI TSKKQRKVGL PRRSKADLFM GQSDGDTEMA NGGGSSNSDN 240 GDAETSAS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT064879 | 0.0 | BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds. |