PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G140000.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 226aa    MW: 24438.4 Da    PI: 4.9462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G140000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-1476119755
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +ErrRR+r+N+++  Lr+++P+      +K++Ka+i + A+eY+ +Lq
  Sobic.004G140000.2.p  76 VMERRRRRRLNDRLYALRSVVPNI-----TKMDKASIIKDAIEYVLQLQ 119
                           69*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.69469118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1773134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-1675124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1676134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1176119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-683115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDLTMGDSFA CFWDCLDDSE GMQSLYIGPD GDTAVSGGGV QLQVHDGYSS APDAAGSNFS  60
AGAEREGSRP CNMVTVMERR RRRRLNDRLY ALRSVVPNIT KMDKASIIKD AIEYVLQLQQ  120
LERQLLAEVA LLDTAANAHH LPAGCANTPS TEDGFAGHAA VSVSPTKKMK RNPSFSSHHS  180
RSSSPPVDAL EKEEMHQTEM KEMIETAISQ LDDIVGSPLM SSTSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784ERRRRRRL
27883RRRRRR
38188RRRLNDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G140000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314165.11e-142transcription factor bHLH35 isoform X2
TrEMBLA0A1Z5RN581e-167A0A1Z5RN58_SORBI; Uncharacterized protein
STRINGSb04g017390.11e-143(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.35e-07bHLH family protein