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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G140000.1.p | ||||||||
Common Name | Sb04g017390, SORBIDRAFT_04g017390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 30304.3 Da PI: 6.4171 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 76 | 119 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+r+N+++ Lr+++P+ +K++Ka+i + A+eY+ +Lq Sobic.004G140000.1.p 76 VMERRRRRRLNDRLYALRSVVPNI-----TKMDKASIIKDAIEYVLQLQ 119 69*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.694 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-17 | 73 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-16 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-16 | 76 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-11 | 76 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.70E-6 | 83 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDLTMGDSFA CFWDCLDDSE GMQSLYIGPD GDTAVSGGGV QLQVHDGYSS APDAAGSNFS 60 AGAEREGSRP CNMVTVMERR RRRRLNDRLY ALRSVVPNIT KMDKASIIKD AIEYVLQLQQ 120 LERQLLAEVA LLDTAANAHH LPAGCANTPS TEDGFAGHAA VSVSPTKKMK RNPSFSSHHS 180 RSSSPPVDAL EVRVSGAGDK VLVVSVACTH RRDAVAKVCR ALDGLRLRVI AANVTAASGT 240 VMHTALVQKE EMHQTEMKEM IETAISQLDD IVGSPLMSST SY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 84 | ERRRRRRL |
2 | 78 | 83 | RRRRRR |
3 | 81 | 88 | RRRLNDRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G140000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452037.1 | 0.0 | transcription factor bHLH35 isoform X1 | ||||
TrEMBL | C5Y131 | 0.0 | C5Y131_SORBI; Uncharacterized protein | ||||
STRING | Sb04g017390.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 9e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G140000.1.p |
Entrez Gene | 8081697 |