PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G112200.1.p
Common NameSb04g009180, SORBIDRAFT_04g009180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 345aa    MW: 38531.7 Da    PI: 7.3532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G112200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52101401128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                           +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+evd++k+ePwdL+   ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkat
  Sobic.004G112200.1.p  10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREVDLNKLEPWDLKDrcRIGTeSQDEWYFFSHKDKKYPTGTRTNRATTAGFWKAT 97 
                           69****************************.9***************943444442445****************************** PP

                   NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           g+dk+++    g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  Sobic.004G112200.1.p  98 GRDKAIFLGnAGRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140
                           *******9767888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-597162IPR003441NAC domain
PROSITE profilePS5100559.35110162IPR003441NAC domain
PfamPF023651.8E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MHPSCSPLAV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREVDLNKL EPWDLKDRCR  60
IGTESQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR RIGLRKTLVF  120
YTGRAPHGKK TDWIMHEYRL NDDSVEVPIT EDGWVVCRVF KKKSIQRGFD DHLGMAAAGD  180
DDELHSFHSP GGVMTPVDQK HGLHHLMHGG VPAFDPSMHL PHLTSAEAPL GAPAFTSGGT  240
SAVAMNLLDM GCSSHNMVMK MTTSCGSASD MPLNSGGERF GAAADWSILD KLLASHQNLD  300
QLFHCKFGGT TLAVPRHYQQ QQMQQQQQQL MEMSASSLHR LPLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51816415167NO APICAL MERISTEM PROTEIN
1ut4_B2e-51816415167NO APICAL MERISTEM PROTEIN
1ut7_A2e-51816415167NO APICAL MERISTEM PROTEIN
1ut7_B2e-51816415167NO APICAL MERISTEM PROTEIN
4dul_A2e-51816415167NAC domain-containing protein 19
4dul_B2e-51816415167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.28120.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G112200.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9530450.0EU953045.1 Zea mays clone 1377565 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451881.10.0NAC domain-containing protein 76
SwissprotQ5Z6B61e-104NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLC5XZ540.0C5XZ54_SORBI; Uncharacterized protein
STRINGSb04g009180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.33e-86NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]