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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.004G107900.1.p |
Common Name | Sb04g008840, SORBIDRAFT_04g008840 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 260aa MW: 27490.8 Da PI: 6.0453 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G107900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 34.9 | 3.3e-11 | 130 | 176 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
kr +r NR +A+rsR RK+++i eLe+ v +L+ e +aL ++
Sobic.004G107900.1.p 130 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQMEVSALSPRVAF 176
899**********************************9999877655 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MAQLPPRAPS ALPQDHWSAA GAEFLGFAAA RRGAHRRSAS DSAAFLEVVP MDDVIGGGGS 60 GSAGDDFDRL DDEQLMSMFS DVDAPAVSDG AGERAGDAAQ LMDVGDAEDG MAASSPAGAR 120 AAADGVADPK RVKRILANRQ SAQRSRVRKL QYISELERSV TSLQMEVSAL SPRVAFLDHQ 180 RSLLTVGNSH LKQRIAALAQ DKIFKDAHQE ALKKEIERLR QVYQQQQIKV ATTGGADIAA 240 AASMQARQEL LACEGAAIR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:18065552}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By white light. {ECO:0000269|PubMed:18065552}. |