PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G101400.1.p
Common NameSb04g008300, SORBIDRAFT_04g008300
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 268aa    MW: 28676.9 Da    PI: 6.1426
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G101400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.7e-33221132102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F+ k+y++++d++++ ++ w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+
  Sobic.004G101400.1.p  22 FVAKTYRMVDDPATDAVVAWGRDSNSFVVADPFVFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQ 101
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           ++ll++i r++s
  Sobic.004G101400.1.p 102 THLLSQIVRRSS 113
                           *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-3718111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5118111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3218111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.1E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-2922111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDSRSMATSR AGVDAAGGVA PFVAKTYRMV DDPATDAVVA WGRDSNSFVV ADPFVFSQTL  60
LPAHFKHSNF SSFVRQLNTY GFRKVDPDRW EFAHVSFLRG QTHLLSQIVR RSSGGGNGGK  120
RNKDDGGGGG GVDEDDAAVA MEVVRLRREQ RAIEEQVAAM WRRVQETERR PKQMLAFLVK  180
VAGDPQVLRR LVSGATAAGT DDAAAATEPQ DAANVKRARL LLDAGGGGSD GAVDFSGFCS  240
TGDEADVGFT DYLLQPPPYV FPVNSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231111316131Heat shock factor protein 1
5d5v_B2e-231111316131Heat shock factor protein 1
5d5v_D2e-231111316131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.62230.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G101400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766690.0EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451825.20.0heat stress transcription factor C-2a isoform X2
SwissprotQ6EUG41e-103HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A194YNU00.0A0A194YNU0_SORBI; Uncharacterized protein
STRINGSb04g008300.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-61heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]