![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.004G101000.1.p | ||||||||
Common Name | Sb04g008260, SORBIDRAFT_04g008260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 21045.6 Da PI: 10.9184 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.3e-07 | 27 | 84 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-.STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as........kapskK.lsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ +s ++++ ++ + Le+A YI++ Sobic.004G101000.1.p 27 KTVERNRRNQMNALYSRLDSLVRAgSSpsssaaaaVQRGPPaMTRPDRLEEAAAYIRQ 84 679*********************766*******97777777**************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.505 | 21 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-8 | 25 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.04E-7 | 27 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-5 | 28 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MEMPPPPPPP PFGGQAAGRG GNKPDRKTVE RNRRNQMNAL YSRLDSLVRA GSSPSSSAAA 60 AVQRGPPAMT RPDRLEEAAA YIRQTTERVE RLKERKRELL TSARASSSQG SGSGSGAAAE 120 VEVQHLGSGL HAILVTGAPP SEGASFHRAV RAVEEAGGEV QNAHFSVVGA RAIYTIHTLV 180 AEGGIERVVQ RLKAALRGDA * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.004G101000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451822.1 | 1e-140 | transcription factor bHLH162 | ||||
TrEMBL | C5XYJ9 | 1e-138 | C5XYJ9_SORBI; Uncharacterized protein | ||||
STRING | Sb04g008260.1 | 1e-139 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 | Representative plant | OGRP14459 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-12 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.004G101000.1.p |
Entrez Gene | 8085556 |