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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.004G100700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 264aa MW: 27314.5 Da PI: 4.9501 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G100700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57 | 4.8e-18 | 53 | 100 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
+ y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++
Sobic.004G100700.1.p 53 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 100
57*****998.**********843...6*********************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MPEGEVEVSS SPASSGATSS SPPPSPGARS RGAGAEKRAR ARDTDGIGSR SHPSYRGVRM 60 RAWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDAAALV VKGPSAVLNF PDMAAALPRP 120 ASASPRDVQA AAARAAAMEP AALVLVPGAG GAPAEAAGAA LQLQPAAPPA AGHGQQQDEA 180 ELEAIVELPR LDEDYLMTTF GATTPCCLSS SFHDVATPWC DDTVWVDGDA GGYVAAQHDD 240 YLFGLLDGDH GWSQSVGALL WNL*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5wx9_A | 2e-17 | 46 | 111 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP004857 | 1e-114 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. |
GenBank | AP014958 | 1e-114 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | AY258281 | 1e-114 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |