PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G097700.1.p
Common NameSb04g008030, SORBIDRAFT_04g008030
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 565aa    MW: 58844.8 Da    PI: 6.9393
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G097700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.8e-084745121854
                           HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +Fe+  ++yp+ +e+  LA++ gL+ +qV++WF N R +
  Sobic.004G097700.1.p 474 MFENflHPYPKDHEKDVLAARSGLSRNQVSNWFINARVR 512
                           5776679******************************88 PP
2BELL27.57.9e-10331404472
                  BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeava....glgs.akpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           e q+ ++kLl+ l+ +d++Y+q+ +++q   + F++ +    g g+   + + +A +a+S  +r L+ ++a+ i
  Sobic.004G097700.1.p 331 EAQRVRSKLLKTLQLMDQKYNQCLDEIQSTTAKFNTLMhspsGAGNgGSICAPFAHRAVSAMYRGLRRRLAGEI 404
                           678889*****************************997443333321378999**************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0033259402IPR006563POX domain
PfamPF075263.8E-22264400IPR006563POX domain
PROSITE profilePS5007111.353453516IPR001356Homeobox domain
SMARTSM003892.0E-6456520IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-24456527IPR009057Homeodomain-like
CDDcd000862.30E-11456517No hitNo description
SuperFamilySSF466891.24E-15457526IPR009057Homeodomain-like
PfamPF059208.1E-16473512IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MASDPSSFSP IGVVEAMGGG YFMAGGSNSY GGTGGGIMSA EVPHFHPGML LDHGGGFGFG  60
GLGDAAVCGA GAATATDLVG AHYAANNIVL ASFASQLFAS TTAQPQDDRT GGRTPPEEMD  120
DEVYGVPGSD SRVVAASLRC PSQSGPMAVW SSSKKPYGVW TGAGGPVAVP ANDPYHLAGA  180
EFHPDAGGSF HYYPLAVAAC SGANASAAAA SELSLTLCSN SISSSDSAAL NAAEQCSSGA  240
SRSALTELPR ARSGSRMAPH FAVVVARSRY AAVVQEVLND VVGHMLDGVA DVADDSCSGV  300
DGGGSVGAPS AVSSNRFMVA SSADAGARWG EAQRVRSKLL KTLQLMDQKY NQCLDEIQST  360
TAKFNTLMHS PSGAGNGGSI CAPFAHRAVS AMYRGLRRRL AGEIMAAASR ASCWGESSSS  420
VTATAAGGDV ERSWESAFIQ KHWSAQQLRR AEKQCWRPQR GLPEKSVAVL KAWMFENFLH  480
PYPKDHEKDV LAARSGLSRN QVSNWFINAR VRLWKPMIEE MYQDLKGSSG AGGGGGQRPP  540
AMELLQHQHM SKRRIICELE DGGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G097700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416740.0BT041674.1 Zea mays full-length cDNA clone ZM_BFb0029O24 mRNA, complete cds.
GenBankBT0549590.0BT054959.1 Zea mays full-length cDNA clone ZM_BFc0113I21 mRNA, complete cds.
GenBankBT0663910.0BT066391.1 Zea mays full-length cDNA clone ZM_BFc0036O04 mRNA, complete cds.
GenBankBT0857030.0BT085703.1 Zea mays full-length cDNA clone ZM_BFc0049M04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451809.10.0homeobox protein ATH1
TrEMBLC5XYH20.0C5XYH2_SORBI; Uncharacterized protein
STRINGSb04g008030.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.13e-51homeobox gene 1