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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.004G078800.2.p |
Common Name | Sb04g006500, SORBIDRAFT_04g006500 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 488aa MW: 52197.5 Da PI: 8.4904 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.004G078800.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 35.5 | 2.2e-11 | 162 | 198 | 3 | 39 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39
+ k rr+++NReAAr+sR+RKka+i++Le+ L+
Sobic.004G078800.2.p 162 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLT 198
67999*************************8655555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 488 aa
Download sequence Send
to blast |
MGDRTWQQPH EQPQAYPDAG TMVQASSSSV HGSIIKEPGG GYDMAEFDQA LFLYLNSQDQ 60 ASVIQDQPQT LNIFPSQPMH VVEPAPKGGS MGTNNTASNA AAVAGSSSKQ QQQPPPPPPP 120 PNKDGGKPAA VKREGSGGGA AMGSGTPSTS NNRQEGRPRT SDAKTLRRLA QNREAARKSR 180 LRKKAYIQNL ETSRIRLTQL EQDLHYRSRT QGAVFGGGAL SGCSGGLSPE AAWFDMEHAR 240 WQEEHGKMMR HLRAALEAEH AASAASTSTA AEAQLLRQLV DAAAAHHGVL AELKAVAARA 300 DAFHLVSGAW ASAAERCFLW IGGFRPSELI KIAARHAEPL TEQQAMGVCG VQQWARDAEA 360 ALDHELQAMH RSVSEAVSSD AAALLCPYSD VPGFMATMSL AISKLASLEA FVRQADALRL 420 QALHRLPQIL TARQSARCFL AIADYSHRLR ALSELWHTRP GQDPAASNLA AGPSSQRPPY 480 QSRDGLL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |