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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.004G078100.2.p | ||||||||
Common Name | Sb04g006450, SORBIDRAFT_04g006450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C3H | ||||||||
Protein Properties | Length: 226aa MW: 23407.6 Da PI: 9.9971 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.3e-08 | 26 | 51 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ Sobic.004G078100.2.p 26 KTRLCNKYNTAEGCKWGDKCHFAHGE 51 8***********************96 PP | |||||||
2 | zf-CCCH | 35.2 | 2.2e-11 | 191 | 215 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C +fa+ G C++Gd+C+FaHg Sobic.004G078100.2.p 191 FKTKMCENFAK-GSCSFGDKCHFAHG 215 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-14 | 21 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-8 | 23 | 55 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.069 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.953 | 24 | 52 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-5 | 26 | 51 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 7.6E-14 | 87 | 165 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.1E-9 | 94 | 164 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 3.8E-14 | 95 | 163 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.571 | 95 | 159 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.9E-10 | 97 | 161 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.13E-13 | 97 | 159 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-17 | 187 | 222 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-9 | 189 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.934 | 190 | 217 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-7 | 190 | 216 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-8 | 191 | 215 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MTNLGGTTIA SPGRMTMDGP PTPTVKTRLC NKYNTAEGCK WGDKCHFAHG EKELGKPKLM 60 GSYMPPPMGP RPTGHFAPPP MASPGLATPA SFGASATAKI SVDASLAGGI IGRGGVNTKQ 120 ISRVTGAKLA IRDHESDTSL KNIELEGTFD QIRNASAMVS ELIVSISGNA PPQAKNPAGG 180 THRGGRTGSN FKTKMCENFA KGSCSFGDKC HFAHGDNELR KPAAA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.004G078100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451712.1 | 1e-165 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-124 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A194YNB7 | 1e-164 | A0A194YNB7_SORBI; Uncharacterized protein | ||||
TrEMBL | C5XXF8 | 1e-163 | C5XXF8_SORBI; Uncharacterized protein | ||||
STRING | Sb04g006450.1 | 1e-164 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-53 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.004G078100.2.p |
Entrez Gene | 8082890 |