PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G077500.1.p

Common Name

Sb04g006400, SORBIDRAFT_04g006400

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 302aa MW: 32546.1 Da PI: 4.7718

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G077500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.1e-09	130	175	4	49
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +++ r ++NR +A +sR++Kk +++ Le k+k Leae +L l Sobic.004G077500.1.p 130 SQKKWRQMRNRDSAMKSREKKKLYVKDLEIKSKYLEAECCRLSYAL 175 67889*********************************88877555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-11	127	190	No hit	No description
SMART	SM00338	0.0091	128	191	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	131	181	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.06E-10	132	189	No hit	No description
PROSITE pattern	PS00036	0	135	149	IPR004827	Basic-leucine zipper domain
CDD	cd14704	9.22E-12	135	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAAAGIGAGG GEDHDLPLEE VDAVLASFSG DPAAAFAPLP APEAAASREP VVVAGESLRE 60 GLGDVEKFLM QDYEDEAPLD GVDEFLNGIL VGDSEGEGSP KLTGEKSADR ACAGEDEVVV 120 GVDCGDDSNS QKKWRQMRNR DSAMKSREKK KLYVKDLEIK SKYLEAECCR LSYALQCCTA 180 ENMVLRQSLL KDRHAGAPTA MQESAELSET LPLVSLLWLV SILCLFLVDD MPNRSLVAPR 240 SLERDLVKLA RTSINGVKMT RMTNNSDNPG ALGLIRLGRR CRGTRARIKS PWVPWHAVAA 300 C*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.7892	0.0	callus

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G077500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453468.1	0.0	bZIP transcription factor 50
Swissprot	Q69XV0	2e-64	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	C5XXF3	0.0	C5XXF3_SORBI; Uncharacterized protein
STRING	Sb04g006400.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50
Representative plant	OGRP5468	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	8e-11	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Sobic.004G077500.1.p
Entrez Gene	8071623

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]